SMTL ID : 4fnc.1

Human TDG in a post-reactive complex with 5-hydroxymethyluracil (5hmU)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x HMU: 5-HYDROXYMETHYL URACIL(Non-covalent)

HMU.1: 12 residues within 4Å: Chain A: G.34, I.35, N.36, G.38, Y.48, N.53, N.87, N.126, S.167, S.168, S.169 Chain C: X.17 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.35, A:N.36, A:G.38, A:N.53, A:S.167, A:S.169 Water bridges: A:G.38, A:Y.48, A:N.87 pi-Stacking: A:Y.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation. Nucleic Acids Res. (2012)

Release Date

2012-09-19

Peptides

G/T mismatch-specific thymine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G/T mismatch-specific thymine DNA glycosylase

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