SMTL ID : 4fno.2 (1 other biounit)

Crystal structure of peptidyl t-RNA hydrolase from Pseudomonas aeruginosa at 2.2 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: G.11, N.12, P.13, N.23, A.26, L.49, I.64, P.65, T.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.11 GOL.2: 3 residues within 4Å: Chain A: Q.5, K.58, D.59 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.59 Water bridges: A:Q.5, A:Q.5, A:D.59, A:D.59, A:R.61, A:F.83 GOL.3: 5 residues within 4Å: Chain A: L.97, G.113, G.114, H.140, V.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.114, A:H.140

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: K.45, F.47, Q.74, A.77, A.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A. et al., Structural and binding studies of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa provide a platform for the structure-based inhibitor design against peptidyl-tRNA hydrolase. Biochem.J. (2014)

Release Date

2012-07-04

Peptides

Peptidyl-tRNA hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidyl-tRNA hydrolase

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