SMTL ID : 4fqk.1 (1 other biounit)

Influenza B/Brisbane/60/2008 hemagglutinin Fab CR8059 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 5.65 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.145, N.148, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: E.292, N.304 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain A: I.30, N.333 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain E: N.145, N.148, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 2 residues within 4Å: Chain E: E.292, N.304 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 2 residues within 4Å: Chain E: I.30, N.333 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain I: N.145, N.148, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 2 residues within 4Å: Chain I: E.292, N.304 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 2 residues within 4Å: Chain I: I.30, N.333 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.4: 4 residues within 4Å: Chain A: N.197, T.199, Q.200, S.243 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.9: 4 residues within 4Å: Chain E: N.197, T.199, Q.200, S.243 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.14: 4 residues within 4Å: Chain I: N.197, T.199, Q.200, S.243 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.233 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.233 NAG.10: 1 residues within 4Å: Chain E: N.233 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:N.233 NAG.15: 1 residues within 4Å: Chain I: N.233 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:N.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dreyfus, C. et al., Highly conserved protective epitopes on influenza B viruses. Science (2012)

Release Date

2012-08-22

Peptides

Hemagglutinin HA1: AEI
Hemagglutinin HA2: BFJ
Antibody CR8059 Heavy Chain: CGK
Antibody CR8059 Light Chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
H

G
H

K
H

D
L

H
L

L
L

Hemagglutinin HA1

Hemagglutinin HA2

Antibody CR8059 Heavy Chain

Antibody CR8059 Light Chain

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