SMTL ID : 4fqm.1 (1 other biounit)

Structure of B/Brisbane/60/2008 Influenza Hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

hetero-3-3-mer

Ligands

9 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: N.145, N.148, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 5 residues within 4Å: Chain A: I.30, N.333 Chain B: W.21, I.45, T.49 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 4 residues within 4Å: Chain A: N.197, T.199, Q.200, S.243 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 4 residues within 4Å: Chain C: N.145, N.148, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.8: 3 residues within 4Å: Chain C: I.30, N.333 Chain D: W.21 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.9: 4 residues within 4Å: Chain C: N.197, T.199, Q.200, S.243 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.10: 4 residues within 4Å: Chain E: N.145, N.148, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.13: 5 residues within 4Å: Chain E: I.30, N.333 Chain F: W.21, I.45, T.49 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.14: 4 residues within 4Å: Chain E: N.197, T.199, Q.200, S.243 No protein-ligand interaction detected (PLIP)

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: E.292, N.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.292 NAG-NAG.3: 4 residues within 4Å: Chain A: S.12, P.13, N.25, Y.337 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: S.12, P.13, N.25, Y.337 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 2 residues within 4Å: Chain E: E.292, N.304 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:E.292, E:E.292 NAG-NAG.12: 4 residues within 4Å: Chain E: S.12, P.13, N.25, Y.337 No protein-ligand interaction detected (PLIP)

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 1 residues within 4Å: Chain A: N.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59 NAG.16: 1 residues within 4Å: Chain A: N.233 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.233 NAG.17: 2 residues within 4Å: Chain B: N.145, T.147 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.145, B:T.147, B:T.147 NAG.18: 2 residues within 4Å: Chain C: E.292, N.304 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.292, C:E.292 NAG.19: 2 residues within 4Å: Chain C: N.59, S.92 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.59 NAG.20: 1 residues within 4Å: Chain C: N.233 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:N.233 NAG.21: 2 residues within 4Å: Chain D: N.145, T.147 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.145, D:T.147, D:T.147 NAG.22: 1 residues within 4Å: Chain E: N.59 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.59 NAG.23: 1 residues within 4Å: Chain E: N.233 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:N.233 NAG.24: 2 residues within 4Å: Chain F: N.145, T.147 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.145, F:T.147, F:T.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dreyfus, C. et al., Highly conserved protective epitopes on influenza B viruses. Science (2012)

Release Date

2012-08-22

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1

Hemagglutinin HA2

Related Entries With Identical Sequence