SMTL ID : 4fqx.1 (2 other biounits)

Crystal structure of HLA-DM bound to HLA-DR1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain D: V.116, N.118, E.166, W.168 Chain E: G.7, D.8 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pos, W. et al., Crystal Structure of the HLA-DM-HLA-DR1 Complex Defines Mechanisms for Rapid Peptide Selection. Cell(Cambridge,Mass.) (2012)

Release Date

2013-01-09

Peptides

HLA class II histocompatibility antigen, DM alpha chain: A
HLA class II histocompatibility antigen, DM beta chain: B
Synthetic peptide: C
HLA class II histocompatibility antigen, DR alpha chain: D
HLA class II histocompatibility antigen, DRB1-1 beta chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
A

E
B

HLA class II histocompatibility antigen, DM alpha chain

HLA class II histocompatibility antigen, DM beta chain

Synthetic peptide

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen, DRB1-1 beta chain

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