SMTL ID : 4fuq.1 (3 other biounits)

Crystal structure of apo MatB from Rhodopseudomonas palustris

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.396, R.397, G.398, K.399, D.400 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.397, A:K.399, A:D.400 Water bridges: A:K.399, A:D.400, A:K.412 Salt bridges: A:K.399, A:K.488

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: P.82, L.83, N.84, Y.87, L.161, Y.162, Y.206, H.207 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.84, A:N.84, A:Y.87, A:Y.162, A:H.207 Water bridges: A:Y.87 GOL.3: 8 residues within 4Å: Chain A: S.275, G.276, S.277, A.278, P.279, E.298, R.299 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.275, A:S.277, A:R.299, A:R.299 Water bridges: A:R.299 GOL.4: 6 residues within 4Å: Chain A: T.85, A.86, Y.87, T.88, L.89, K.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.87, A:L.89, A:K.110 GOL.5: 8 residues within 4Å: Chain A: H.209, G.276, S.277, R.299, G.301, M.302, M.307 Ligands: GOL.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.277, A:R.299, A:R.299, A:G.301, A:G.301 Water bridges: A:H.209, A:R.299, A:G.301, A:T.303 GOL.6: 4 residues within 4Å: Chain A: E.91, Y.94, F.95, S.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.170 Water bridges: A:H.90, A:Y.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crosby, H.A. et al., Structure-Guided Expansion of the Substrate Range of Methylmalonyl Coenzyme A Synthetase (MatB) of Rhodopseudomonas palustris. Appl.Environ.Microbiol. (2012)

Release Date

2012-07-25

Peptides

Malonyl CoA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Malonyl CoA synthetase

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