SMTL ID : 4fv0.1

Crystal Structure of the ERK2 complexed with EK3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x EK3: N-cyclohexyl-4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]pyridin-2-amine(Non-covalent)

EK3.1: 16 residues within 4Å: Chain A: I.31, G.32, E.33, V.39, A.52, K.54, Q.105, D.106, L.107, M.108, E.109, T.110, D.111, K.114, L.156, C.166 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.31, A:V.39, A:A.52, A:K.114 Hydrogen bonds: A:M.108 Halogen bonds: A:K.114

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.151, S.153, T.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.151, A:S.153 EDO.3: 6 residues within 4Å: Chain A: H.299, K.300, R.301, I.302, E.303, Q.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.303, A:Q.306 EDO.4: 3 residues within 4Å: Chain A: K.117, T.118, N.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.117 EDO.5: 6 residues within 4Å: Chain A: N.123, D.124, C.127, D.283, Y.312, Q.315 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.123, A:D.124, A:Y.312 EDO.6: 4 residues within 4Å: Chain A: D.124, H.125, Y.128, Y.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.125 EDO.7: 9 residues within 4Å: Chain A: R.77, F.78, Y.139, A.143, A.325, E.326, A.327, P.328, F.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.77, A:E.326, A:A.327 EDO.8: 3 residues within 4Å: Chain A: N.238, G.242, K.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.270 EDO.9: 4 residues within 4Å: Chain A: L.265, S.266, L.267, P.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.265

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 6 residues within 4Å: Chain A: E.81, N.82, Y.128, Q.132, R.135, D.162 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.82, A:N.82, A:R.135, A:D.162 Water bridges: A:L.163 GOL.11: 4 residues within 4Å: Chain A: D.288, K.292, H.310, P.311 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.292, A:H.310 Water bridges: A:D.288, A:D.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the ERK2 complexed with EK3. TO BE PUBLISHED

Release Date

2012-08-22

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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