SMTL ID : 4fv2.1

Crystal Structure of the ERK2 complexed with EK5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x EK5: 4-[4-(3-chlorophenyl)-1H-pyrazol-5-yl]-N-(2,3-dihydro-1-benzofuran-5-ylmethyl)-1H-pyrrole-2-carboxamide(Non-covalent)

EK5.1: 22 residues within 4Å: Chain A: I.31, G.32, E.33, G.34, A.35, Y.36, G.37, V.39, A.52, K.54, I.56, I.84, Q.105, D.106, L.107, M.108, D.111, K.114, N.154, L.156, C.166, D.167 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.31, A:V.39, A:V.39, A:K.54, A:I.84, A:L.156 Hydrogen bonds: A:K.54, A:Q.105, A:D.106, A:M.108 Water bridges: A:D.167

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Y.187, R.191, R.194, Y.233 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.187, A:Y.233 Salt bridges: A:R.191, A:R.194 SO4.3: 5 residues within 4Å: Chain A: T.63, R.67, R.70, L.170, V.188 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.70 Salt bridges: A:R.67

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: E.81, N.82, Y.128, Q.132, R.135, D.162 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.82, A:N.82, A:R.135, A:D.162 Water bridges: A:K.164 GOL.10: 8 residues within 4Å: Chain A: D.20, R.91, A.92, Q.97, M.98, K.99, D.100, Y.102 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.20, A:A.92, A:K.99, A:D.100, A:D.100, A:D.100, A:D.100 GOL.11: 2 residues within 4Å: Chain A: D.124, Y.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.124

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: H.299, K.300, R.301, Q.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.301, A:Q.306 EDO.6: 2 residues within 4Å: Chain A: K.151, S.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.153, A:S.153 EDO.7: 5 residues within 4Å: Chain A: L.116, K.117, Q.119, H.120, N.224 No protein-ligand interaction detected (PLIP) EDO.8: 2 residues within 4Å: Chain A: P.311, Y.312 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.285, A:E.314, A:Q.315, A:Q.315 EDO.9: 4 residues within 4Å: Chain A: N.281, A.282, D.283, S.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.284, A:S.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the ERK2 complexed with EK5. TO BE PUBLISHED

Release Date

2012-08-29

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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