SMTL ID : 4fv5.1

Crystal Structure of the ERK2 complexed with EK9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x EK9: N-[(1S)-2-hydroxy-1-phenylethyl]-4-(5-methyl-2-phenylpyrimidin-4-yl)-1H-pyrrole-2-carboxamide(Non-covalent)

EK9.1: 24 residues within 4Å: Chain A: I.31, E.33, G.34, Y.36, G.37, M.38, V.39, A.52, K.54, K.55, I.56, I.84, Q.105, D.106, L.107, M.108, E.109, T.110, D.111, K.114, N.154, L.156, C.166, D.167 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.31, A:V.39, A:A.52, A:I.56, A:Q.105, A:L.107 Hydrogen bonds: A:M.108, A:D.167 Water bridges: A:S.153, A:S.153, A:F.168 pi-Stacking: A:Y.36 pi-Cation interactions: A:K.54

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.191, R.194, H.232, Y.233 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.233 Salt bridges: A:R.191, A:R.194 SO4.3: 1 residues within 4Å: Chain A: K.48 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.48 SO4.4: 5 residues within 4Å: Chain A: R.70, R.172, V.173, F.331, D.336 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.173 Salt bridges: A:R.70 SO4.5: 4 residues within 4Å: Chain A: V.14, R.15, S.29, Y.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.30 Salt bridges: A:R.15 SO4.6: 1 residues within 4Å: Chain A: R.191 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.191 Salt bridges: A:R.191

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: E.60, H.61, Q.62, T.63 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.61, A:Q.62, A:T.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the ERK2 complexed with EK9. TO BE PUBLISHED

Release Date

2012-08-29

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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