SMTL ID : 4fv7.1

Crystal Structure of the ERK2 complexed with E94

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x E94: 4-(3-chlorophenyl)-5-{2-[(3-hydroxyphenyl)amino]pyrimidin-4-yl}-2-{[2-(piperidin-1-yl)ethyl]amino}thiophene-3-carbonitrile(Non-covalent)

E94.1: 24 residues within 4Å: Chain A: I.31, G.32, E.33, G.34, V.39, A.52, I.53, K.54, E.71, L.75, I.84, I.103, V.104, Q.105, D.106, L.107, M.108, D.111, K.114, S.153, N.154, L.156, C.166, D.167 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.31, A:I.31, A:V.39, A:V.39, A:A.52, A:K.54, A:K.54, A:I.103, A:Q.105, A:L.156, A:L.156 Hydrogen bonds: A:M.108, A:M.108, A:N.154 Water bridges: A:E.33, A:A.35 Salt bridges: A:D.111

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.67, R.148, R.172, V.188, Y.205 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.205 Water bridges: A:R.148 Salt bridges: A:R.67, A:R.148, A:R.172 SO4.3: 5 residues within 4Å: Chain A: Y.187, R.191, R.194, H.232, Y.233 6 PLIP interactions: 6 interactions with chain A Water bridges: A:Y.187, A:R.194, A:Y.233, A:Y.233 Salt bridges: A:R.191, A:R.194 SO4.4: 4 residues within 4Å: Chain A: R.77, P.328, F.329, K.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.330, A:K.330 Salt bridges: A:R.77

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: E.60, H.61, Q.62, T.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.61, A:Q.62, A:T.63, A:T.63 EDO.6: 2 residues within 4Å: Chain A: D.124, Y.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.124 EDO.7: 5 residues within 4Å: Chain A: Y.113, K.151, S.153, T.190, W.192 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.153

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 7 residues within 4Å: Chain A: N.123, C.127, D.283, K.285, P.311, Y.312, Q.315 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.123, A:D.283, A:Q.315 Water bridges: A:D.124, A:Q.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the ERK2 complexed with E94. TO BE PUBLISHED

Release Date

2012-08-29

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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