Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 4fwq.1
Crystal structure of Salmonella typhimurium propionate kinase (TdcD) in complex with GTP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.65 Å
Oligo State
homo-dimer
Ligands
4 x
EDO
:
1,2-ETHANEDIOL
(Non-functional Binders)
EDO.1:
5 residues within 4Å:
Chain A:
H.188
,
G.220
,
P.240
,
R.249
Ligands:
GTP.3
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:R.249
,
A:R.249
EDO.2:
3 residues within 4Å:
Chain A:
H.329
Chain B:
G.356
,
V.357
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:H.329
EDO.4:
5 residues within 4Å:
Chain B:
H.188
,
G.220
,
P.240
,
R.249
Ligands:
GTP.6
2
PLIP interactions
:
2 interactions with chain B
Hydrogen bonds:
B:R.249
,
B:R.249
EDO.5:
3 residues within 4Å:
Chain A:
G.356
,
V.357
Chain B:
H.329
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:H.329
2 x
GTP
:
GUANOSINE-5'-TRIPHOSPHATE
(Non-covalent)
GTP.3:
15 residues within 4Å:
Chain A:
H.188
,
H.216
,
G.218
,
N.219
,
G.220
,
S.290
,
D.291
,
L.292
,
R.293
,
E.296
,
G.339
,
I.340
,
N.343
,
S.344
Ligands:
EDO.1
17
PLIP interactions
:
17 interactions with chain A
Hydrogen bonds:
A:N.219
,
A:N.219
,
A:N.219
,
A:G.220
,
A:D.291
,
A:L.292
,
A:R.293
,
A:G.339
,
A:N.343
,
A:S.344
Water bridges:
A:K.31
,
A:V.345
Salt bridges:
A:K.31
,
A:H.188
,
A:H.216
,
A:E.296
pi-Cation interactions:
A:R.293
GTP.6:
15 residues within 4Å:
Chain B:
H.188
,
H.216
,
G.218
,
N.219
,
G.220
,
S.290
,
D.291
,
L.292
,
R.293
,
E.296
,
G.339
,
I.340
,
N.343
,
S.344
Ligands:
EDO.4
17
PLIP interactions
:
17 interactions with chain B
Hydrogen bonds:
B:N.219
,
B:N.219
,
B:N.219
,
B:G.220
,
B:D.291
,
B:L.292
,
B:R.293
,
B:G.339
,
B:N.343
,
B:S.344
Water bridges:
B:K.31
,
B:V.345
Salt bridges:
B:K.31
,
B:H.188
,
B:H.216
,
B:E.296
pi-Cation interactions:
B:R.293
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Chittori, S. et al., Mechanistic features of Salmonella typhimurium propionate kinase (TdcD): insights from kinetic and crystallographic studies. Biochim.Biophys.Acta (2013)
Release Date
2013-06-19
Peptides
Propionate kinase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Propionate kinase
Toggle Identical (AB)
Related Entries With Identical Sequence
1x3m.1
|
1x3n.1
|
2e1y.1
|
2e1z.1
|
2e20.1
|
4fwk.1
|
4fwn.1
|
4fwo.1
|
4fwp.1
|
4fwr.1
|
4fws.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme