SMTL ID : 4fwu.2 (1 other biounit)

Crystal structure of glutaminyl cyclase from drosophila melanogaster in space group I4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: E.10, V.11, N.14, W.280 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.280 Water bridges: A:R.284 NAG-NAG-BMA.11: 4 residues within 4Å: Chain B: E.10, V.11, N.14, W.280 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.280 Water bridges: B:R.284 NAG-NAG-BMA.21: 4 residues within 4Å: Chain C: E.10, V.11, N.14, W.280 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:W.280 Water bridges: C:R.284 NAG-NAG-BMA.31: 4 residues within 4Å: Chain D: E.10, V.11, N.14, W.280 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:W.280 Water bridges: D:R.284

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: D.103, E.143, H.269 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.103, A:E.143, A:E.143, A:H.269, H2O.14 ZN.12: 3 residues within 4Å: Chain B: D.103, E.143, H.269 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.103, B:E.143, B:E.143, B:H.269, H2O.27 ZN.22: 3 residues within 4Å: Chain C: D.103, E.143, H.269 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.103, C:E.143, C:E.143, C:H.269, H2O.41 ZN.32: 3 residues within 4Å: Chain D: D.103, E.143, H.269 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.103, D:E.143, D:E.143, D:H.269, H2O.55

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: E.142, D.190, L.191, V.242, D.243, D.244, F.264, W.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.243, A:W.268 Water bridges: A:D.243 EDO.4: 4 residues within 4Å: Chain A: K.90, K.146, E.147, W.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.90, A:K.90, A:W.148 EDO.8: 4 residues within 4Å: Chain A: Y.297, R.300, H.301, V.305 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.300 EDO.13: 8 residues within 4Å: Chain B: E.142, D.190, L.191, V.242, D.243, D.244, F.264, W.268 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.243, B:W.268 Water bridges: B:D.243 EDO.14: 4 residues within 4Å: Chain B: K.90, K.146, E.147, W.148 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.90, B:K.90, B:W.148 EDO.18: 4 residues within 4Å: Chain B: Y.297, R.300, H.301, V.305 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.300 EDO.23: 8 residues within 4Å: Chain C: E.142, D.190, L.191, V.242, D.243, D.244, F.264, W.268 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.243, C:W.268 Water bridges: C:D.243 EDO.24: 4 residues within 4Å: Chain C: K.90, K.146, E.147, W.148 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.90, C:K.90, C:W.148 EDO.28: 4 residues within 4Å: Chain C: Y.297, R.300, H.301, V.305 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.300 EDO.33: 8 residues within 4Å: Chain D: E.142, D.190, L.191, V.242, D.243, D.244, F.264, W.268 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.243, D:W.268 Water bridges: D:D.243 EDO.34: 4 residues within 4Å: Chain D: K.90, K.146, E.147, W.148 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.90, D:K.90, D:W.148 EDO.38: 4 residues within 4Å: Chain D: Y.297, R.300, H.301, V.305 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.300

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: T.149, D.150 Chain C: P.59, V.60, K.146 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: L.234, S.235, R.236 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: R.272, N.274, A.276, N.277 Ligand excluded by PLIP SO4.9: 1 residues within 4Å: Chain A: R.236 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: Q.56, R.57 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: T.149, D.150 Chain D: P.59, V.60, K.146 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain B: L.234, S.235, R.236 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: R.272, N.274, A.276, N.277 Ligand excluded by PLIP SO4.19: 1 residues within 4Å: Chain B: R.236 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: Q.56, R.57 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain B: P.59, V.60, K.146 Chain C: T.149, D.150 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain C: L.234, S.235, R.236 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain C: R.272, N.274, A.276, N.277 Ligand excluded by PLIP SO4.29: 1 residues within 4Å: Chain C: R.236 Ligand excluded by PLIP SO4.30: 2 residues within 4Å: Chain C: Q.56, R.57 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain A: P.59, V.60, K.146 Chain D: T.149, D.150 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain D: L.234, S.235, R.236 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain D: R.272, N.274, A.276, N.277 Ligand excluded by PLIP SO4.39: 1 residues within 4Å: Chain D: R.236 Ligand excluded by PLIP SO4.40: 2 residues within 4Å: Chain D: Q.56, R.57 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolenko, P. et al., Structure of glutaminyl cyclase from Drosophila melanogaster in space group I4. Acta Crystallogr.,Sect.F (2013)

Release Date

2012-09-05

Peptides

CG32412: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

CG32412

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