SMTL ID : 4fzx.1

Exonuclease X in complex with 3' overhanging duplex DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: A.16, G.17 Chain C: D.6 Ligands: NA.3 2 PLIP interactions: 2 interactions with chain C Water bridges: C:D.6, C:D.139 NA.2: 4 residues within 4Å: Chain B: C.16, T.17 Chain D: D.6 Ligands: NA.4 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.6 NA.3: 5 residues within 4Å: Chain A: G.17 Chain C: D.6, E.8, D.139 Ligands: NA.1 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.8, C:D.139 Water bridges: C:N.114, C:N.114 NA.4: 5 residues within 4Å: Chain B: T.17 Chain D: D.6, E.8, D.139 Ligands: NA.2 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.139, D:D.139 Water bridges: D:N.114, D:N.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease. Nucleic Acids Res. (2013)

Release Date

2013-07-03

Peptides

Exodeoxyribonuclease 10: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

D
D

Exodeoxyribonuclease 10

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