SMTL ID : 4fzy.1

Exonuclease X in complex with 12bp blunt-ended dsDNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: A.11, G.12 Chain B: D.6, T.7, D.85 Ligands: NA.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.85 NA.2: 6 residues within 4Å: Chain A: G.12 Chain B: D.6, E.8, H.134, D.139 Ligands: NA.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.8, B:D.139 NA.3: 6 residues within 4Å: Chain C: C.11, A.12 Chain D: D.6, T.7, D.85 Ligands: NA.4 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.6 NA.4: 6 residues within 4Å: Chain C: A.12 Chain D: D.6, E.8, H.134, D.139 Ligands: NA.3 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.6, D:H.134, D:D.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease. Nucleic Acids Res. (2013)

Release Date

2013-07-03

Peptides

Exodeoxyribonuclease 10: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

D
B

Exodeoxyribonuclease 10

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