SMTL ID : 4g10.1

LigG from Sphingobium sp. SYK-6 is related to the glutathione transferase omega class

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 14 residues within 4Å: Chain A: I.12, C.15, P.16, F.17, I.39, R.43, T.55, A.56, L.57, P.58, E.70, S.71, M.72 Ligands: ACT.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.17 Hydrogen bonds: A:T.55, A:L.57, A:L.57, A:E.70, A:E.70, A:S.71 Water bridges: A:R.43, A:E.70, A:S.71, A:S.71 Salt bridges: A:R.43 GSH.4: 14 residues within 4Å: Chain B: I.12, C.15, P.16, F.17, I.39, R.43, T.55, A.56, L.57, P.58, E.70, S.71, M.72 Ligands: ACT.5 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.17 Hydrogen bonds: B:T.55, B:L.57, B:L.57, B:E.70, B:S.71 Water bridges: B:R.43, B:E.70, B:S.71, B:S.71 Salt bridges: B:R.43

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: C.15, P.16, I.39, Y.113, Y.214, Y.217, F.235 Ligands: GSH.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.39, A:Y.214, A:F.235 Hydrogen bonds: A:Y.113, A:Y.214 Water bridges: A:Y.217, A:Y.217 ACT.5: 8 residues within 4Å: Chain B: C.15, P.16, I.39, Y.113, Y.214, Y.217, F.235 Ligands: GSH.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.39, B:Y.214, B:F.235 Hydrogen bonds: B:Y.113, B:Y.214 Water bridges: B:Y.217, B:Y.217

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: P.13, Y.204, R.205, E.209, W.241, R.242 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Y.204, A:E.209, A:W.241 Water bridges: A:E.36, A:E.36, A:E.36, A:R.205, A:R.205, A:R.205, A:P.237, A:R.242, A:R.242, A:R.242 Salt bridges: A:R.205, A:R.242 SO4.6: 6 residues within 4Å: Chain B: P.13, Y.204, R.205, E.209, W.241, R.242 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:Y.204, B:E.209, B:W.241 Water bridges: B:E.36, B:R.205, B:R.205, B:R.205, B:E.209, B:P.237, B:D.240, B:R.242, B:R.242 Salt bridges: B:R.205, B:R.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meux, E. et al., Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase omega class. Febs Lett. (2012)

Release Date

2012-10-03

Peptides

Glutathione S-transferase homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutathione S-transferase homolog

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