SMTL ID : 4yav.1

Crystal structure of LigG in complex with B-glutathionyl-acetoveratrone (GS-AV) from Sphingobium sp. strain SYK-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.206, K.207, E.208 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.207, A:E.208 Water bridges: A:Q.203, A:Q.203, A:E.208 SO4.3: 3 residues within 4Å: Chain B: S.206, K.207, E.208 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.207, B:E.208 Water bridges: B:Q.203, B:Q.203

2 x GAZ: L-gamma-glutamyl-3-{(E)-[2-(3,4-dimethoxyphenyl)-2-oxoethylidene]-lambda~4~-sulfanyl}-L-alanylglycine(Non-covalent)

GAZ.2: 21 residues within 4Å: Chain A: I.12, C.15, P.16, F.17, R.20, I.39, R.43, T.55, A.56, L.57, P.58, E.70, S.71, M.72, S.109, G.110, Y.113, R.114, L.117, Y.217, N.223 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.17, A:T.55 Hydrogen bonds: A:A.56, A:L.57, A:L.57, A:E.70, A:S.71 Water bridges: A:R.20, A:E.70, A:E.70, A:S.71 pi-Stacking: A:Y.113 GAZ.4: 21 residues within 4Å: Chain B: I.12, C.15, P.16, F.17, R.20, I.39, R.43, T.55, A.56, L.57, P.58, E.70, S.71, M.72, S.109, G.110, Y.113, R.114, L.117, Y.217, N.223 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.17, B:T.55 Hydrogen bonds: B:A.56, B:L.57, B:L.57, B:E.70, B:S.71 Water bridges: B:R.20, B:E.70, B:S.71, B:S.71 pi-Stacking: B:Y.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira, J.H. et al., Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin beta-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6. J.Biol.Chem. (2016)

Release Date

2016-03-09

Peptides

Glutathione S-transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glutathione S-transferase

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