SMTL ID : 4g32.1

Crystal Structure of a Phospholipid-Lipoxygenase Complex from Pseudomonas aeruginosa at 1.75A (P21212)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.380, H.385, H.558, N.562, I.688 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.380, A:H.385, A:H.558, A:I.688, H2O.1

1 x ZPE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradec-5-enoyloxy)propyl (11Z)-octadec-11-enoate(Non-covalent)

ZPE.2: 26 residues within 4Å: Chain A: W.108, T.112, I.116, L.119, I.120, L.185, V.188, G.189, D.193, L.196, E.376, H.380, H.385, F.418, I.419, G.422, A.423, R.425, I.426, L.427, F.433, L.606, N.610, Y.612, L.615, I.688 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.108, A:T.112, A:I.120, A:L.196, A:I.419, A:I.419, A:A.423, A:I.426, A:L.427, A:F.433, A:L.606, A:N.610, A:Y.612, A:L.615, A:L.615 Hydrogen bonds: A:D.193 Water bridges: A:D.193 Salt bridges: A:R.425

13 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: E.102, C.392, Q.396, A.410, F.413, E.414 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.396 Water bridges: A:G.101, A:E.102 GOL.4: 4 residues within 4Å: Chain A: R.251, D.290, A.292, E.293 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.249, A:R.251, A:D.290 GOL.5: 1 residues within 4Å: Chain A: K.530 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.530 GOL.6: 8 residues within 4Å: Chain A: R.232, D.234, R.348, P.349, Y.357, W.360, Q.361, K.364 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.232, A:R.348, A:P.349, A:Q.361, A:K.364 Water bridges: A:D.234 GOL.7: 4 residues within 4Å: Chain A: A.661, T.662, T.665 Ligands: GOL.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.662 GOL.8: 4 residues within 4Å: Chain A: Q.496, A.499, D.500, A.503 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.496, A:D.500 GOL.9: 3 residues within 4Å: Chain A: Y.459, Q.542, E.545 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.465, A:E.465, A:R.535, A:Q.542 GOL.10: 3 residues within 4Å: Chain A: D.585, S.586, K.590 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.586, A:K.590, A:K.590 Water bridges: A:S.586 GOL.11: 5 residues within 4Å: Chain A: A.661, R.664, T.665, Q.668 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.665, A:Q.668 GOL.12: 7 residues within 4Å: Chain A: F.219, R.223, L.224, P.225, P.566, T.570, H.613 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.613 GOL.13: 5 residues within 4Å: Chain A: L.57, Y.60, V.504, Y.505, R.641 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.504, A:R.641, A:R.641 GOL.14: 6 residues within 4Å: Chain A: K.90, G.91, A.447, G.450, G.451, L.454 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.90 Water bridges: A:A.447 GOL.15: 4 residues within 4Å: Chain A: D.509, T.538, G.539, Q.542 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.538, A:Q.542 Water bridges: A:R.540, A:S.541

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garreta, A. et al., Structure and interaction with phospholipids of a prokaryotic lipoxygenase from Pseudomonas aeruginosa. Faseb J. (2013)

Release Date

2013-11-06

Peptides

15S-LIPOXYGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

15S-LIPOXYGENASE

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