SMTL ID : 4g6o.1

Crystal Structure of the ERK2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x E28: 4-{4-[4-(aminomethyl)-3-(trifluoromethyl)phenyl]-1H-pyrazol-5-yl}-N-(2,3-dihydro-1-benzofuran-5-ylmethyl)-1H-pyrrole-2-carboxamide(Non-covalent)

E28.1: 20 residues within 4Å: Chain A: I.31, G.32, E.33, Y.36, G.37, M.38, V.39, A.52, K.54, K.55, I.56, I.84, Q.105, D.106, L.107, M.108, D.111, L.156, C.166, D.167 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.31, A:V.39, A:K.54, A:L.156 Hydrogen bonds: A:K.54, A:Q.105, A:D.106, A:M.108 Water bridges: A:Q.105, A:D.167 pi-Cation interactions: A:K.54

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.187, R.191, R.194, H.232, Y.233 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.187 Water bridges: A:R.194, A:R.194, A:Y.233, A:Y.233 Salt bridges: A:R.191, A:R.194

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: R.77, F.78, Y.139, A.143, A.325, A.327, P.328, F.329 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.77, A:E.326 Water bridges: A:Y.139, A:E.326 EDO.4: 2 residues within 4Å: Chain A: D.124, Y.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.124 EDO.5: 4 residues within 4Å: Chain A: K.151, S.153, T.190, W.192 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.151, A:S.153 EDO.6: 5 residues within 4Å: Chain A: L.116, K.117, T.118, H.120, N.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the ERK2 complexed with E28. to be published

Release Date

2012-09-19

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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