SMTL ID : 4g8o.4 (3 other biounits)

Crystal Structure of a novel small molecule inactivator bound to plasminogen activator inhibitor-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: M.144, I.145, S.146, H.147, E.278, K.320, K.322 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.146, A:S.146, A:H.147, A:H.147, A:E.278 Salt bridges: A:K.320, A:K.322 SO4.2: 4 residues within 4Å: Chain A: S.116, T.117, K.119, W.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.116, A:T.117 Salt bridges: A:K.119

1 x 96P: (2S)-3-({[3-(trifluoromethyl)phenoxy]carbonyl}amino)propane-1,2-diyl bis(3,4,5-trihydroxybenzoate)(Non-covalent)

96P.3: 13 residues within 4Å: Chain A: W.172, K.173, T.174, F.176, Q.201, N.203, K.204, F.205, N.206, L.223, P.224, D.228, R.265 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.205, A:P.224 Hydrogen bonds: A:K.173, A:K.173, A:T.174, A:Q.201, A:N.206 Salt bridges: A:K.173, A:R.265, A:R.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S.H. et al., Mechanistic characterization and crystal structure of a small molecule inactivator bound to plasminogen activator inhibitor-1. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-12-25

Peptides

Plasminogen activator inhibitor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Plasminogen activator inhibitor 1

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