SMTL ID : 4g8r.2 (1 other biounit)

Crystal Structure of a novel small molecule inactivator bound to plasminogen activator inhibitor-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.116, T.117, K.119, W.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.117, A:T.117 Salt bridges: A:K.119

2 x 96P: (2S)-3-({[3-(trifluoromethyl)phenoxy]carbonyl}amino)propane-1,2-diyl bis(3,4,5-trihydroxybenzoate)(Non-covalent)

96P.2: 4 residues within 4Å: Chain A: S.3, Y.4, H.7, D.65 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.4 Hydrogen bonds: A:S.3, A:Y.4 Salt bridges: A:H.7 96P.3: 9 residues within 4Å: Chain A: S.38, M.42, L.72, R.73, Y.76, K.77, D.92, F.114, R.115 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.73, A:Y.76, A:R.115 Hydrogen bonds: A:S.38, A:S.38, A:D.92 Water bridges: A:Y.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S.H. et al., Mechanistic characterization and crystal structure of a small molecule inactivator bound to plasminogen activator inhibitor-1. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-12-25

Peptides

Plasminogen activator inhibitor-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Plasminogen activator inhibitor-1

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