SMTL ID : 4gcp.1 (1 other biounit)

Crystal Structure of E. coli OmpF porin in complex with Ampicillin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-trimer

Ligands

3 x AIC: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID(Non-covalent)

AIC.1: 11 residues within 4Å: Chain A: Y.23, Y.33, G.34, F.119, G.120, G.121, D.122, Y.125, S.126, R.168, R.169 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.119 Hydrogen bonds: A:G.120, A:S.126 Water bridges: A:Y.33, A:Y.33, A:S.126, A:R.133, A:R.169 Salt bridges: A:R.168, A:R.169 AIC.2: 11 residues within 4Å: Chain B: Y.23, Y.33, G.34, F.119, G.120, G.121, D.122, Y.125, S.126, R.168, R.169 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.119 Hydrogen bonds: B:G.120, B:S.126 Water bridges: B:Y.33, B:Y.33, B:S.126, B:R.133, B:R.169 Salt bridges: B:R.168, B:R.169 AIC.3: 11 residues within 4Å: Chain C: Y.23, Y.33, G.34, F.119, G.120, G.121, D.122, Y.125, S.126, R.168, R.169 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:F.119 Hydrogen bonds: C:G.120, C:S.126 Water bridges: C:Y.33, C:Y.33, C:S.126, C:R.133, C:R.169 Salt bridges: C:R.168, C:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ziervogel, B.K. et al., The Binding of Antibiotics in OmpF Porin. Structure (2013)

Release Date

2012-12-19

Peptides

Outer membrane protein F: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein F

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