SMTL ID : 4gcq.2 (1 other biounit)

Crystal Structure of E. coli OmpF porin in complex with Carbenicillin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x 0JM: (2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carbo xylic acid(Non-covalent)

0JM.1: 10 residues within 4Å: Chain A: Y.15, G.16, K.17, R.43, K.47, Q.61, E.63, R.83, L.84, Q.340 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.15, A:K.17, A:R.43 Hydrogen bonds: A:Q.61, A:E.63 Water bridges: A:Q.61, A:R.83, A:R.83 Salt bridges: A:K.17, A:R.43, A:K.47, A:R.83 pi-Stacking: A:Y.15 pi-Cation interactions: A:K.17 0JM.2: 10 residues within 4Å: Chain B: Y.15, G.16, K.17, R.43, K.47, Q.61, E.63, R.83, L.84, Q.340 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.15, B:K.17, B:R.43 Hydrogen bonds: B:Q.61, B:E.63 Water bridges: B:Q.61, B:R.83, B:R.83 Salt bridges: B:K.17, B:R.43, B:K.47, B:R.83 pi-Stacking: B:Y.15 pi-Cation interactions: B:K.17 0JM.3: 10 residues within 4Å: Chain C: Y.15, G.16, K.17, R.43, K.47, Q.61, E.63, R.83, L.84, Q.340 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:Y.15, C:K.17, C:R.43 Hydrogen bonds: C:Q.61, C:E.63 Water bridges: C:Q.61, C:R.83, C:R.83 Salt bridges: C:K.17, C:R.43, C:K.47, C:R.83 pi-Stacking: C:Y.15 pi-Cation interactions: C:K.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ziervogel, B.K. et al., The Binding of Antibiotics in OmpF Porin. Structure (2013)

Release Date

2012-12-19

Peptides

Outer membrane protein F: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein F

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