SMTL ID : 4gcw.3 (2 other biounits)

Crystal structure of RNase Z in complex with precursor tRNA(Thr)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.67, H.68, D.211, H.269 Chain D: U.74 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.67, A:H.68, A:D.211, A:H.269 ZN.2: 6 residues within 4Å: Chain A: H.63, H.65, H.140, D.211 Chain D: U.74 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:H.65, A:H.140, A:D.211 ZN.4: 6 residues within 4Å: Chain B: U.74 Chain C: D.67, H.68, D.211, H.269 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.67, C:H.68, C:D.211, C:H.269 ZN.5: 6 residues within 4Å: Chain B: U.74 Chain C: H.63, H.65, H.140, D.211 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.63, C:H.65, C:H.140, C:D.211

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 9 residues within 4Å: Chain A: R.30, R.31, S.32, R.54, K.55, E.57, R.79, D.86 Chain B: U.4 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.54, A:D.86 MES.6: 9 residues within 4Å: Chain C: R.30, R.31, S.32, R.54, K.55, E.57, R.79, D.86 Chain D: U.4 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.54, C:D.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pellegrini, O. et al., Activation of tRNA Maturation by Downstream Uracil Residues in B. subtilis. Structure (2012)

Release Date

2012-10-31

Peptides

Ribonuclease Z: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Ribonuclease Z

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