SMTL ID : 4gjw.1 (1 other biounit)

Structure of the tetramerization domain of Nipah virus phosphoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain B: F.20, P.21, H.22 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: E.68 Chain C: R.63, H.66 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: E.68 Chain D: R.63, H.66 Ligand excluded by PLIP

1 x ARG: ARGININE(Non-covalent)

ARG.2: 6 residues within 4Å: Chain B: T.18, F.19, F.20, H.22, D.23 Chain C: N.59 9 PLIP interactions: 3 interactions with chain C, 5 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: C:N.59, C:N.59, C:N.59, B:T.18, B:F.20, B:H.22 Hydrophobic interactions: B:F.20 Salt bridges: B:D.23, R.2

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: R.26, Y.29 Chain C: D.14 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.14 GOL.5: 3 residues within 4Å: Chain B: D.14 Chain C: R.26, Y.29 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.26 GOL.7: 4 residues within 4Å: Chain B: D.25, R.26, Y.29 Chain D: D.14 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yabukarski, F. et al., Nipah Virus Phosphoprotein Oligomerisation domain. To be Published

Release Date

2014-02-12

Peptides

Phosphoprotein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
H

Phosphoprotein

Related Entries With Identical Sequence