SMTL ID : 4gp0.2 (2 other biounits)

The crystal structure of human fascin 1 R149A K150A R151A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

6 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: R.167, D.168, V.169 Ligands: EPE.33 Ligand excluded by PLIP BR.2: 5 residues within 4Å: Chain A: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: Q.182, D.183, Q.184, R.185 Ligand excluded by PLIP BR.4: 1 residues within 4Å: Chain A: R.201 Ligand excluded by PLIP BR.5: 4 residues within 4Å: Chain A: R.229, Y.230, G.243, K.244 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain A: G.86, P.87, R.90 Ligand excluded by PLIP

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: R.110, F.122, Q.124 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: R.82, E.83, V.84 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: F.418, D.420 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: A.58, R.217, S.218, K.250 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: H.198, D.199, R.229 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: R.308, G.312 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: Q.104, R.109 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: R.408, S.409 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain A: H.135, S.409, S.410 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: T.246, K.247, V.248 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: P.128, K.131 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain A: R.185 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain A: T.125, V.126 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain A: E.417, F.418 Ligands: GOL.28, GOL.29 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain A: R.398, K.399, R.408 Ligands: CL.24 Ligand excluded by PLIP CL.22: 1 residues within 4Å: Chain A: D.446 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain A: G.20, K.22, T.115, E.116 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain A: R.398, K.399, V.400 Ligands: CL.21 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.25: 9 residues within 4Å: Chain A: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.344, A:G.421, A:F.453 Water bridges: A:M.378 GOL.26: 9 residues within 4Å: Chain A: L.40, K.41, A.137, H.392, G.393, N.407, R.408, S.409 Ligands: DTT.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.407, A:S.409 GOL.27: 9 residues within 4Å: Chain A: I.17, S.133, V.134, H.135, Q.182, D.183, Q.184, R.185, Y.186 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.185 Water bridges: A:S.133, A:S.133, A:S.133, A:Q.184 GOL.28: 10 residues within 4Å: Chain A: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligands: CL.20, GOL.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.383 GOL.29: 7 residues within 4Å: Chain A: H.193, P.384, Q.415, L.416, E.417 Ligands: CL.20, GOL.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.384, A:L.416, A:E.417 GOL.30: 3 residues within 4Å: Chain A: R.343, R.344, D.420 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.344, A:R.344, A:D.420

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.31: 4 residues within 4Å: Chain A: K.41, K.42, K.43 Ligands: GOL.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.41 DTT.32: 5 residues within 4Å: Chain A: G.113, G.114, T.115, S.120, E.130 No protein-ligand interaction detected (PLIP)

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.33: 6 residues within 4Å: Chain A: D.166, R.167, T.289, D.290, Q.291 Ligands: BR.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.290, A:D.290 Salt bridges: A:D.166, A:D.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular mechanism of fascin function in filopodial formation. J.Biol.Chem. (2013)

Release Date

2012-11-28

Peptides

Fascin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fascin

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