SMTL ID : 4gp0.3 (2 other biounits)

The crystal structure of human fascin 1 R149A K150A R151A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

14 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.18: 4 residues within 4Å: Chain B: R.167, D.168, V.169 Ligands: EPE.50 Ligand excluded by PLIP BR.19: 5 residues within 4Å: Chain B: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.20: 4 residues within 4Å: Chain B: Q.182, D.183, Q.184, R.185 Ligand excluded by PLIP BR.21: 1 residues within 4Å: Chain B: R.201 Ligand excluded by PLIP BR.22: 4 residues within 4Å: Chain B: R.229, Y.230, G.243, K.244 Ligand excluded by PLIP BR.23: 3 residues within 4Å: Chain B: G.86, P.87, R.90 Ligand excluded by PLIP BR.51: 4 residues within 4Å: Chain C: G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.68: 4 residues within 4Å: Chain D: R.167, D.168, V.169 Ligands: EPE.100 Ligand excluded by PLIP BR.69: 5 residues within 4Å: Chain D: R.82, G.86, P.87, D.88, C.89 Ligand excluded by PLIP BR.70: 4 residues within 4Å: Chain D: Q.182, D.183, Q.184, R.185 Ligand excluded by PLIP BR.71: 1 residues within 4Å: Chain D: R.201 Ligand excluded by PLIP BR.72: 4 residues within 4Å: Chain D: R.229, Y.230, G.243, K.244 Ligand excluded by PLIP BR.73: 3 residues within 4Å: Chain D: G.86, P.87, R.90 Ligand excluded by PLIP

58 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: T.484, V.485 Chain B: R.398 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: K.303, C.456, D.457 Chain B: V.400, T.401 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: E.417, F.418 Ligands: GOL.14 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: S.329, K.330 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: Q.182, D.183, R.185 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: F.418, D.420 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: S.437 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: G.445, D.446 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: H.198, D.199, R.229 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: K.131 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: K.43, Q.44 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain B: R.110, F.122, Q.124 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain B: R.82, E.83, V.84 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain B: F.418, D.420 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain B: A.58, R.217, S.218, K.250 Chain D: G.56 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain B: H.198, D.199, R.229 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain B: R.308, G.312 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain B: Q.104, R.109 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain B: R.408, S.409 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain B: H.135, S.409, S.410 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain B: T.246, K.247, V.248 Chain D: A.107 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain B: P.128, K.131 Ligand excluded by PLIP CL.35: 1 residues within 4Å: Chain B: R.185 Ligand excluded by PLIP CL.36: 2 residues within 4Å: Chain B: T.125, V.126 Ligand excluded by PLIP CL.37: 4 residues within 4Å: Chain B: E.417, F.418 Ligands: GOL.45, GOL.46 Ligand excluded by PLIP CL.38: 5 residues within 4Å: Chain A: P.487 Chain B: R.398, K.399, R.408 Ligands: CL.41 Ligand excluded by PLIP CL.39: 1 residues within 4Å: Chain B: D.446 Ligand excluded by PLIP CL.40: 4 residues within 4Å: Chain B: G.20, K.22, T.115, E.116 Ligand excluded by PLIP CL.41: 5 residues within 4Å: Chain A: P.487 Chain B: R.398, K.399, V.400 Ligands: CL.38 Ligand excluded by PLIP CL.52: 3 residues within 4Å: Chain C: T.484, V.485 Chain D: R.398 Ligand excluded by PLIP CL.53: 5 residues within 4Å: Chain C: K.303, C.456, D.457 Chain D: V.400, T.401 Ligand excluded by PLIP CL.54: 3 residues within 4Å: Chain C: E.417, F.418 Ligands: GOL.64 Ligand excluded by PLIP CL.55: 2 residues within 4Å: Chain C: S.329, K.330 Ligand excluded by PLIP CL.56: 3 residues within 4Å: Chain C: Q.182, D.183, R.185 Ligand excluded by PLIP CL.57: 2 residues within 4Å: Chain C: F.418, D.420 Ligand excluded by PLIP CL.58: 1 residues within 4Å: Chain C: S.437 Ligand excluded by PLIP CL.59: 2 residues within 4Å: Chain C: G.445, D.446 Ligand excluded by PLIP CL.60: 3 residues within 4Å: Chain C: H.198, D.199, R.229 Ligand excluded by PLIP CL.61: 1 residues within 4Å: Chain C: K.131 Ligand excluded by PLIP CL.62: 2 residues within 4Å: Chain C: K.43, Q.44 Ligand excluded by PLIP CL.74: 3 residues within 4Å: Chain D: R.110, F.122, Q.124 Ligand excluded by PLIP CL.75: 3 residues within 4Å: Chain D: R.82, E.83, V.84 Ligand excluded by PLIP CL.76: 2 residues within 4Å: Chain D: F.418, D.420 Ligand excluded by PLIP CL.77: 5 residues within 4Å: Chain B: G.56 Chain D: A.58, R.217, S.218, K.250 Ligand excluded by PLIP CL.78: 3 residues within 4Å: Chain D: H.198, D.199, R.229 Ligand excluded by PLIP CL.79: 2 residues within 4Å: Chain D: R.308, G.312 Ligand excluded by PLIP CL.80: 2 residues within 4Å: Chain D: Q.104, R.109 Ligand excluded by PLIP CL.81: 2 residues within 4Å: Chain D: R.408, S.409 Ligand excluded by PLIP CL.82: 3 residues within 4Å: Chain D: H.135, S.409, S.410 Ligand excluded by PLIP CL.83: 4 residues within 4Å: Chain B: A.107 Chain D: T.246, K.247, V.248 Ligand excluded by PLIP CL.84: 2 residues within 4Å: Chain D: P.128, K.131 Ligand excluded by PLIP CL.85: 1 residues within 4Å: Chain D: R.185 Ligand excluded by PLIP CL.86: 2 residues within 4Å: Chain D: T.125, V.126 Ligand excluded by PLIP CL.87: 4 residues within 4Å: Chain D: E.417, F.418 Ligands: GOL.95, GOL.96 Ligand excluded by PLIP CL.88: 5 residues within 4Å: Chain C: P.487 Chain D: R.398, K.399, R.408 Ligands: CL.91 Ligand excluded by PLIP CL.89: 1 residues within 4Å: Chain D: D.446 Ligand excluded by PLIP CL.90: 4 residues within 4Å: Chain D: G.20, K.22, T.115, E.116 Ligand excluded by PLIP CL.91: 5 residues within 4Å: Chain C: P.487 Chain D: R.398, K.399, V.400 Ligands: CL.88 Ligand excluded by PLIP

20 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 10 residues within 4Å: Chain A: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453, F.455 Ligand excluded by PLIP GOL.14: 8 residues within 4Å: Chain A: L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligands: CL.4 Ligand excluded by PLIP GOL.15: 10 residues within 4Å: Chain A: C.260, A.261, L.296, I.298, F.455, C.456, Y.458, N.459, K.460, Y.493 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain A: A.149, V.165, D.166, P.236 Ligand excluded by PLIP GOL.42: 9 residues within 4Å: Chain B: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453 Ligand excluded by PLIP GOL.43: 9 residues within 4Å: Chain B: L.40, K.41, A.137, H.392, G.393, N.407, R.408, S.409 Ligands: DTT.48 Ligand excluded by PLIP GOL.44: 9 residues within 4Å: Chain B: I.17, S.133, V.134, H.135, Q.182, D.183, Q.184, R.185, Y.186 Ligand excluded by PLIP GOL.45: 10 residues within 4Å: Chain B: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligands: CL.37, GOL.46 Ligand excluded by PLIP GOL.46: 7 residues within 4Å: Chain B: H.193, P.384, Q.415, L.416, E.417 Ligands: CL.37, GOL.45 Ligand excluded by PLIP GOL.47: 3 residues within 4Å: Chain B: R.343, R.344, D.420 Ligand excluded by PLIP GOL.63: 10 residues within 4Å: Chain C: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453, F.455 Ligand excluded by PLIP GOL.64: 8 residues within 4Å: Chain C: L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligands: CL.54 Ligand excluded by PLIP GOL.65: 10 residues within 4Å: Chain C: C.260, A.261, L.296, I.298, F.455, C.456, Y.458, N.459, K.460, Y.493 Ligand excluded by PLIP GOL.66: 4 residues within 4Å: Chain C: A.149, V.165, D.166, P.236 Ligand excluded by PLIP GOL.92: 9 residues within 4Å: Chain D: W.340, D.342, R.343, R.344, I.345, G.421, Y.423, F.452, F.453 Ligand excluded by PLIP GOL.93: 9 residues within 4Å: Chain D: L.40, K.41, A.137, H.392, G.393, N.407, R.408, S.409 Ligands: DTT.98 Ligand excluded by PLIP GOL.94: 9 residues within 4Å: Chain D: I.17, S.133, V.134, H.135, Q.182, D.183, Q.184, R.185, Y.186 Ligand excluded by PLIP GOL.95: 10 residues within 4Å: Chain D: K.379, L.380, I.381, N.382, R.383, P.384, L.416, F.418 Ligands: CL.87, GOL.96 Ligand excluded by PLIP GOL.96: 7 residues within 4Å: Chain D: H.193, P.384, Q.415, L.416, E.417 Ligands: CL.87, GOL.95 Ligand excluded by PLIP GOL.97: 3 residues within 4Å: Chain D: R.343, R.344, D.420 Ligand excluded by PLIP

6 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.17: 5 residues within 4Å: Chain A: R.341, D.342, R.343, R.344, L.375 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.341, A:R.343 DTT.48: 4 residues within 4Å: Chain B: K.41, K.42, K.43 Ligands: GOL.43 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.41 DTT.49: 5 residues within 4Å: Chain B: G.113, G.114, T.115, S.120, E.130 No protein-ligand interaction detected (PLIP) DTT.67: 5 residues within 4Å: Chain C: R.341, D.342, R.343, R.344, L.375 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.341, C:R.343 DTT.98: 4 residues within 4Å: Chain D: K.41, K.42, K.43 Ligands: GOL.93 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.41 DTT.99: 5 residues within 4Å: Chain D: G.113, G.114, T.115, S.120, E.130 No protein-ligand interaction detected (PLIP)

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.50: 6 residues within 4Å: Chain B: D.166, R.167, T.289, D.290, Q.291 Ligands: BR.18 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.290, B:D.290 Salt bridges: B:D.166, B:D.290 EPE.100: 6 residues within 4Å: Chain D: D.166, R.167, T.289, D.290, Q.291 Ligands: BR.68 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.290, D:Q.291 Salt bridges: D:D.166, D:D.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Molecular mechanism of fascin function in filopodial formation. J.Biol.Chem. (2013)

Release Date

2012-11-28

Peptides

Fascin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fascin

Related Entries With Identical Sequence