SMTL ID : 4grr.1

characterization of N- and C- terminus mutants of human MIF

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: P.17, D.18 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.18 Water bridges: A:A.14, A:A.14, A:V.16 SO4.2: 5 residues within 4Å: Chain A: V.44, Q.47 Chain B: Q.47 Chain C: V.44, Q.47 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: B:Q.47, B:Q.47, A:Q.47, C:Q.47 Water bridges: A:D.46 SO4.3: 4 residues within 4Å: Chain A: G.70, G.71, A.72, Q.73 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.70, A:G.71, A:A.72, A:Q.73, A:Q.73 SO4.13: 4 residues within 4Å: Chain C: G.70, G.71, A.72, Q.73 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.71, C:A.72, C:Q.73, C:Q.73 Water bridges: C:I.69 SO4.14: 2 residues within 4Å: Chain C: N.111, N.112 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.111 Water bridges: C:N.112, C:N.112

11 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: M.103, N.104, N.107 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: N.112 Chain B: G.83, A.86, P.93 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: K.34, K.68 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: G.19, F.20, L.21 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: G.70, G.71, A.72, Q.73 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: S.22, T.25, Q.26 Chain C: G.53 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: M.103, N.104, N.107 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: P.35, P.36, Q.37 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain C: M.103, N.104, N.107 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain C: P.1, I.66, A.105 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain C: S.54, S.55 Ligand excluded by PLIP

1 x AVR: (2R)-2-amino-1-[2-(1-methylethyl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one(Non-covalent)

AVR.8: 5 residues within 4Å: Chain B: Q.37, Y.38, W.110, F.115 Chain C: Y.97 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.38, B:Y.38, B:W.110, B:F.115, B:F.115 pi-Stacking: B:W.110, B:W.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., Characterization of N- and C- terminus mutants of human MIF. To be Published

Release Date

2013-09-25

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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