SMTL ID : 4gs6.1

Irreversible Inhibition of TAK1 Kinase by 5Z-7-Oxozeaenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.96, Q.274, Y.275, P.276 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.273 EDO.2: 5 residues within 4Å: Chain A: K.232, P.233, F.298, Y.299, W.302 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.232, A:K.232 EDO.3: 4 residues within 4Å: Chain A: S.107, T.144, A.269, D.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.144 Water bridges: A:Q.111 EDO.4: 3 residues within 4Å: Chain A: S.247, Q.248, R.249 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.240, A:S.251 EDO.5: 5 residues within 4Å: Chain A: A.169, W.170, K.202, P.203, F.204 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: D.294, A.296, E.297 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.294, A:E.297 Water bridges: A:A.102, A:D.294, A:F.298 EDO.7: 4 residues within 4Å: Chain A: R.223, W.242, S.243, K.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.223, A:K.244 Water bridges: A:Q.248 EDO.8: 3 residues within 4Å: Chain A: P.272, L.273, Q.274 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.273 EDO.9: 5 residues within 4Å: Chain A: G.84, V.90, G.142, G.143, L.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.142 Water bridges: A:G.142 EDO.10: 5 residues within 4Å: Chain A: H.279, P.291, Y.292, V.293, D.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.293

1 x 1FM: (3S,5Z,8S,9S,11E)-8,9,16-trihydroxy-14-methoxy-3-methyl-3,4,9,10-tetrahydro-1H-2-benzoxacyclotetradecine-1,7(8H)-dione(Covalent)

1FM.11: 17 residues within 4Å: Chain A: V.17, G.18, R.19, G.20, V.25, A.36, M.79, E.80, Y.81, A.82, G.85, S.86, P.135, N.136, L.138, C.149, D.150 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.17, A:V.25, A:V.25, A:Y.81, A:L.138, A:D.150 Hydrogen bonds: A:E.80, A:A.82, A:D.150 Water bridges: A:S.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, J. et al., Mechanism and In Vitro Pharmacology of TAK1 Inhibition by (5Z)-7-Oxozeaenol. Acs Chem.Biol. (2013)

Release Date

2013-01-23

Peptides

Tak1-Tab1 fusion protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tak1-Tab1 fusion protein

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