SMTL ID : 7nti.1

Structure of TAK1 in complex with compound 22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.264, L.301, V.304, D.305 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.305, A:D.305 GOL.2: 5 residues within 4Å: Chain A: S.107, Q.111, T.144, A.269, D.270 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.107, A:S.107 Water bridges: A:Q.111 GOL.3: 3 residues within 4Å: Chain A: Y.118, S.121, M.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.118 GOL.4: 2 residues within 4Å: Chain A: H.61, Q.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.114 GOL.5: 6 residues within 4Å: Chain A: R.240, S.247, Q.248, R.249, P.250, E.254 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.240, A:R.240, A:Q.248, A:S.251, A:E.254 Water bridges: A:E.254

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 6 residues within 4Å: Chain A: P.96, L.97, P.98, Q.274, Y.275, P.276 No protein-ligand interaction detected (PLIP) DMS.7: 3 residues within 4Å: Chain A: P.233, F.298, W.302 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.302

1 x UWZ: ~{N}-[[2-[bis(fluoranyl)methoxy]phenyl]methyl]-~{N}-[2-(methylamino)-2-oxidanylidene-ethyl]-2-pyrrolidin-1-ylcarbonyl-1~{H}-imidazole-4-carboxamide(Non-covalent)

UWZ.8: 15 residues within 4Å: Chain A: V.17, G.18, V.65, E.80, Y.81, A.82, G.84, G.85, S.86, P.135, N.136, L.137, L.138, C.149, D.150 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.65 Hydrogen bonds: A:A.82, A:G.84 Halogen bonds: A:P.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Veerman, J.J.N. et al., Discovery of 2,4-1 H -Imidazole Carboxamides as Potent and Selective TAK1 Inhibitors. Acs Med.Chem.Lett. (2021)

Release Date

2021-04-07

Peptides

Mitogen-activated protein kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 7,TGF-beta-activated kinase 1 and MAP3K7-binding protein 1

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