SMTL ID : 4gtt.1

Engineered RabGGTase in complex with BMS analogue 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.237, C.239, H.289 Ligands: 7TQ.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.237, B:C.239, B:H.289

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.63, M.65 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.63, B:M.65

1 x 7TQ: 4-({(3R)-7-cyano-4-[(4-methoxyphenyl)sulfonyl]-1-[(1-methyl-1H-imidazol-5-yl)methyl]-2,3,4,5-tetrahydro-1H-1,4-benzodiazepin-3-yl}methyl)phenyl benzylcarbamate(Non-covalent)

7TQ.3: 16 residues within 4Å: Chain A: D.61 Chain B: Y.43, L.44, Y.50, L.95, L.98, Q.102, F.146, Y.194, C.239, W.243, D.286, F.288, H.289, F.312 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.44, B:Y.50, B:L.98, B:F.146, B:Y.194, B:W.243, B:F.288, B:F.288, B:F.288 Hydrogen bonds: B:Y.43, B:F.288 pi-Stacking: B:F.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stigter, E.A. et al., Development of Selective, Potent RabGGTase Inhibitors. J.Med.Chem. (2012)

Release Date

2012-10-24

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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