SMTL ID : 4gtv.1

Engineered RabGGTase in complex with BMS analogue 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.237, C.239, H.289 Ligands: 7TR.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.237, B:D.237, B:C.239, B:H.289

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.63, M.65 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.63, B:M.65, H2O.7, H2O.8, H2O.13

1 x 7TR: 4-({(3R)-7-cyano-4-[(4-methoxyphenyl)sulfonyl]-1-[(1-methyl-1H-imidazol-5-yl)methyl]-2,3,4,5-tetrahydro-1H-1,4-benzodiazepin-3-yl}methyl)phenyl diethylcarbamate(Non-covalent)

7TR.3: 17 residues within 4Å: Chain A: D.61 Chain B: Y.43, L.44, W.51, L.95, R.143, F.146, G.191, C.195, D.237, C.239, W.243, D.286, P.287, F.288, H.289 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.44, B:W.51, B:F.146, B:W.243, B:W.243, B:F.288 Hydrogen bonds: B:Y.43, B:R.143, B:F.288 Water bridges: B:Y.29, B:Y.240 pi-Stacking: B:F.288 pi-Cation interactions: B:R.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stigter, E.A. et al., Development of Selective, Potent RabGGTase Inhibitors. J.Med.Chem. (2012)

Release Date

2012-10-24

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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