SMTL ID : 4guk.3 (3 other biounits)

New crystal form structure of human NCS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.73, N.75, D.77, R.79, E.84 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.73, A:D.77, A:R.79, A:E.84, H2O.3 CA.2: 5 residues within 4Å: Chain A: D.109, D.111, D.113, Y.115, E.120 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.109, A:D.111, A:D.113, A:E.120, H2O.3 CA.3: 5 residues within 4Å: Chain A: D.157, N.159, D.161, K.163, E.168 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.157, A:D.161, A:K.163, A:E.168, H2O.4

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 10 residues within 4Å: Chain A: Y.108, M.121, V.125, R.148, I.152, F.169, S.173, I.179, L.183 Ligands: P2G.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.173 Water bridges: A:Y.108, A:R.148, A:R.148 PG4.9: 7 residues within 4Å: Chain A: F.22, E.26, Q.29, W.30, S.93, R.94, D.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.94

1 x ALA: ALANINE(Non-covalent)

ALA.5: 3 residues within 4Å: Chain A: S.184, L.185, L.189 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.185

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: Y.52, W.103 Ligands: P2G.7, P2G.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.52, A:Y.52

2 x P2G: (2S,4R,6R,6AS)-4-(2-AMINO-6-OXO-1,6-DIHYDROPURIN-9-YL)-6-(HYDROXYMETHYL)-TETRAHYDROFURO[3,4-D][1,3]DIOXOL-2-YLPHOSPHONI C ACID(Non-covalent)

P2G.7: 6 residues within 4Å: Chain A: F.64, L.107, M.131 Ligands: PG4.4, EDO.6, P2G.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.108 P2G.8: 4 residues within 4Å: Chain A: K.100, W.103 Ligands: EDO.6, P2G.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.104

1 x NA: SODIUM ION(Non-functional Binders)

NA.10: 2 residues within 4Å: Chain A: T.17, F.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., new crystal form structure of human NCS1. To be Published

Release Date

2013-12-25

Peptides

Neuronal calcium sensor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neuronal calcium sensor 1

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