SMTL ID : 6qi4.2 (1 other biounit)

NCS-1 bound to a ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.1: 18 residues within 4Å: Chain A: L.101, A.104, Y.108, M.121, V.125, I.128, Y.129, V.132, L.138, R.148, I.152, M.156, F.169, S.173, I.179, A.182, L.183 Ligands: 1PE.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.108, A:R.148 Water bridges: A:R.148

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: D.73, N.75, D.77, R.79, I.80, E.81, E.84 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.73, A:D.77, A:R.79, A:E.84, H2O.1 CA.3: 7 residues within 4Å: Chain A: D.109, D.111, D.113, Y.115, I.116, T.117, E.120 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.109, A:D.113, A:Y.115, A:E.120, H2O.1 CA.4: 6 residues within 4Å: Chain A: D.157, N.159, D.161, K.163, L.164, E.168 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.157, A:D.161, A:K.163, A:E.168, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: T.17, T.20, Y.21, F.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.20, A:F.22

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.6: 13 residues within 4Å: Chain A: Y.52, F.56, F.64, V.68, F.72, T.92, W.103, L.107, Y.108, I.128, M.131, V.132 Ligands: P6G.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Canal-Martin, A. et al., Insights into real-time chemical processes in a calcium sensor protein-directed dynamic library. Nat Commun (2019)

Release Date

2019-07-17

Peptides

Neuronal calcium sensor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Neuronal calcium sensor 1

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