SMTL ID : 4h1d.3 (2 other biounits)

Cocrystal structure of GlpG and DFP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x DFP: DIISOPROPYL PHOSPHONATE(Covalent)

DFP.1: 11 residues within 4Å: Chain A: H.59, N.63, F.106, G.107, G.108, L.109, S.110, G.111, Y.114, W.145, H.163 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.106, A:W.145 Hydrogen bonds: A:N.63, A:S.110 Salt bridges: A:H.59, A:H.163 DFP.2: 11 residues within 4Å: Chain B: H.59, N.63, F.106, G.107, G.108, L.109, S.110, G.111, Y.114, W.145, H.163 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.106, B:W.145 Hydrogen bonds: B:N.63, B:S.110 Salt bridges: B:H.59, B:H.163 DFP.3: 11 residues within 4Å: Chain C: H.59, N.63, F.106, G.107, G.108, L.109, S.110, G.111, Y.114, W.145, H.163 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.106, C:W.145 Hydrogen bonds: C:N.63, C:S.110 Salt bridges: C:H.59, C:H.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, Y. et al., Large lateral movement of transmembrane helix s5 is not required for substrate access to the active site of rhomboid intramembrane protease. J.Biol.Chem. (2013)

Release Date

2013-05-01

Peptides

Rhomboid protease GlpG: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Rhomboid protease GlpG

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