SMTL ID : 4h1q.1 (1 other biounit)

Crystal structure of mutant MMP-9 catalytic domain in complex with a twin inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.117, H.121, H.127 Ligands: 0XX.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.117, A:H.121, A:H.127 ZN.2: 4 residues within 4Å: Chain A: H.66, D.68, H.81, H.94 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.66, A:D.68, A:H.81, A:H.94

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.56, G.88, Q.90, D.92 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:G.88, A:Q.90, A:D.92, H2O.3, H2O.4 CA.4: 5 residues within 4Å: Chain A: S.20, D.22, D.97, E.99, W.101 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.22, A:D.97, A:D.97, A:E.99, H2O.1 CA.5: 7 residues within 4Å: Chain A: D.73, G.74, K.75, D.76, L.78, D.96, E.99 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.73, A:G.74, A:D.76, A:L.78, A:D.96, A:E.99 CA.6: 4 residues within 4Å: Chain A: S.40, T.43, P.44, L.45 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.40, A:T.43, A:L.45, H2O.4

1 x 0XX: N-(4-{[(3R)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)-N'-(4-{[(3S)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)benzene-1,3-dicarboxamide(Non-covalent)

0XX.7: 24 residues within 4Å: Chain A: Y.70, P.71, F.72, D.73, G.77, L.78, L.79, A.80, H.81, A.82, F.83, P.84, L.113, V.114, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139 Ligands: ZN.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.70, A:D.73, A:L.78, A:H.81, A:F.83, A:L.113, A:H.117, A:H.121, A:L.134, A:P.137, A:Y.139 Hydrogen bonds: A:Y.70, A:A.80, A:A.80, A:A.82, A:Q.118 Water bridges: A:H.121 pi-Stacking: A:H.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antoni, C. et al., Crystallization of bi-functional ligand protein complexes. J.Struct.Biol. (2013)

Release Date

2013-04-24

Peptides

Matrix metalloproteinase-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Matrix metalloproteinase-9

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