- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: D.56, G.88, Q.90, D.92
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.56, A:Q.90, A:D.92, H2O.2, H2O.3
CA.4: 6 residues within 4Å:- Chain A: D.73, G.74, D.76, L.78, D.96, E.99
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.73, A:D.76, A:L.78, A:D.96, A:E.99
CA.5: 5 residues within 4Å:- Chain A: S.20, D.22, D.97, E.99, W.101
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.22, A:D.97, A:E.99, H2O.2
CA.9: 4 residues within 4Å:- Chain B: D.56, G.88, Q.90, D.92
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:G.88, B:Q.90, B:D.92, H2O.9, H2O.14
CA.10: 7 residues within 4Å:- Chain B: D.73, G.74, K.75, D.76, L.78, D.96, E.99
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.73, B:G.74, B:D.76, B:L.78, B:D.96
CA.11: 4 residues within 4Å:- Chain B: S.20, D.22, D.97, E.99
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.22, B:D.22, B:D.97, B:D.97, H2O.9
- 1 x L29: N,N'-bis(2-{(biphenyl-4-ylsulfonyl)[(2R)-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]amino}ethyl)benzene-1,3-dicarboxamide (non-preferred name)(Non-covalent)
L29.6: 33 residues within 4Å:- Chain A: G.77, L.78, L.79, A.80, H.81, L.113, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139
- Chain B: G.77, L.78, L.79, A.80, H.81, L.113, V.114, H.117, Q.118, H.121, H.127, L.134, Y.136, P.137, M.138, Y.139
- Ligands: ZN.1, ZN.7
22 PLIP interactions:11 interactions with chain B, 11 interactions with chain A- Hydrophobic interactions: B:L.78, B:H.81, B:H.117, B:L.134, B:Y.139, A:H.81, A:H.117, A:L.134, A:P.137, A:P.137, A:Y.139, A:Y.139
- Hydrogen bonds: B:L.79, B:A.80, B:A.80, B:Q.118, B:P.137, A:A.80, A:A.80, A:Q.118
- pi-Stacking: B:H.117
- Water bridges: A:P.137
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antoni, C. et al., Crystallization of bi-functional ligand protein complexes. J.Struct.Biol. (2013)
- Release Date
- 2013-05-01
- Peptides
- Matrix metalloproteinase-9: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
- 1 x L29: N,N'-bis(2-{(biphenyl-4-ylsulfonyl)[(2R)-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]amino}ethyl)benzene-1,3-dicarboxamide (non-preferred name)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Antoni, C. et al., Crystallization of bi-functional ligand protein complexes. J.Struct.Biol. (2013)
- Release Date
- 2013-05-01
- Peptides
- Matrix metalloproteinase-9: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B