- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NVA: NORVALINE(Non-covalent)
- 3 x CP: PHOSPHORIC ACID MONO(FORMAMIDE)ESTER(Non-covalent)
CP.2: 12 residues within 4Å:- Chain A: S.81, T.82, R.83, T.84, R.132, H.159, Q.162, C.299, L.300, R.344
- Chain B: Q.108
- Ligands: NVA.1
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.82, A:R.83, A:T.84, A:T.84, A:R.132, A:Q.162, A:R.344, B:Q.108
- Water bridges: A:Q.162
- Salt bridges: A:R.83, A:R.132
CP.15: 12 residues within 4Å:- Chain B: S.81, T.82, R.83, T.84, R.132, H.159, Q.162, C.299, L.300, R.344
- Chain C: Q.108
- Ligands: NVA.14
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.82, B:R.83, B:T.84, B:T.84, B:R.132, B:Q.162, B:R.344, C:Q.108
- Salt bridges: B:R.83, B:R.132
CP.27: 12 residues within 4Å:- Chain A: Q.108
- Chain C: S.81, T.82, R.83, T.84, R.132, H.159, Q.162, C.299, L.300, R.344
- Ligands: NVA.25
11 PLIP interactions:10 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:T.82, C:R.83, C:T.84, C:T.84, C:R.132, C:Q.162, C:R.344, A:Q.108
- Water bridges: C:Q.162
- Salt bridges: C:R.83, C:R.132
- 3 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)
PE5.3: 5 residues within 4Å:- Chain A: E.331
- Chain B: K.116, R.120, A.144, F.145
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.331, B:R.120
- Water bridges: B:R.120
PE5.23: 6 residues within 4Å:- Chain B: D.156, E.157, R.191, M.262, G.263, E.264
3 PLIP interactions:3 interactions with chain B- Water bridges: B:D.156, B:D.156, B:N.196
PE5.28: 5 residues within 4Å:- Chain C: D.156, R.191, M.262, G.263, E.264
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.191
- 18 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 3 residues within 4Å:- Chain A: N.31, A.144, G.147
Ligand excluded by PLIPPEG.5: 5 residues within 4Å:- Chain A: D.156, R.191, M.262, G.263, E.264
Ligand excluded by PLIPPEG.6: 6 residues within 4Å:- Chain A: L.286, K.287, G.290, N.291, P.292, H.334
Ligand excluded by PLIPPEG.8: 4 residues within 4Å:- Chain A: D.208, R.210, T.239, E.246
Ligand excluded by PLIPPEG.9: 3 residues within 4Å:- Chain A: N.284, K.287, Q.288
Ligand excluded by PLIPPEG.10: 4 residues within 4Å:- Chain A: K.277, P.278, Q.280, N.282
Ligand excluded by PLIPPEG.12: 5 residues within 4Å:- Chain A: R.120
- Chain C: F.330, E.331, S.335, F.338
Ligand excluded by PLIPPEG.13: 2 residues within 4Å:- Chain A: D.50, D.54
Ligand excluded by PLIPPEG.16: 3 residues within 4Å:- Chain B: K.277, F.318, M.320
Ligand excluded by PLIPPEG.18: 6 residues within 4Å:- Chain B: L.286, K.287, G.290, N.291, P.292, H.334
Ligand excluded by PLIPPEG.20: 6 residues within 4Å:- Chain A: D.306, E.307, T.308, T.309, K.312
- Chain B: G.110
Ligand excluded by PLIPPEG.21: 6 residues within 4Å:- Chain B: A.180, D.181, I.182, G.206, D.208, G.235
Ligand excluded by PLIPPEG.22: 5 residues within 4Å:- Chain B: A.53, K.56, K.57, L.168, E.172
Ligand excluded by PLIPPEG.24: 4 residues within 4Å:- Chain B: S.41, T.42, K.204, I.230
Ligand excluded by PLIPPEG.29: 4 residues within 4Å:- Chain C: R.210, T.239, E.246, Q.249
Ligand excluded by PLIPPEG.30: 6 residues within 4Å:- Chain C: L.286, K.287, G.290, N.291, P.292, H.334
Ligand excluded by PLIPPEG.31: 1 residues within 4Å:- Chain C: E.331
Ligand excluded by PLIPPEG.33: 4 residues within 4Å:- Chain C: S.261, M.262, G.263, E.264
Ligand excluded by PLIP- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 5 residues within 4Å:- Chain A: K.36, L.37, F.158, P.160, S.197
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain A: N.282, M.283, T.326, E.328
Ligand excluded by PLIPCL.17: 5 residues within 4Å:- Chain B: K.36, L.37, F.158, P.160, S.197
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain B: N.282, M.283, T.326, E.328
Ligand excluded by PLIPCL.26: 5 residues within 4Å:- Chain C: K.36, L.37, F.158, P.160, S.197
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain C: N.282, M.283, T.326, E.328
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shabalin, I.G. et al., Structural studies of ornithine carbamoyltransferase from various pathogens. To be Published
- Release Date
- 2012-09-26
- Peptides
- Ornithine carbamoyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NVA: NORVALINE(Non-covalent)
- 3 x CP: PHOSPHORIC ACID MONO(FORMAMIDE)ESTER(Non-covalent)
- 3 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)
- 18 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shabalin, I.G. et al., Structural studies of ornithine carbamoyltransferase from various pathogens. To be Published
- Release Date
- 2012-09-26
- Peptides
- Ornithine carbamoyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C