SMTL ID : 4hai.1

Crystal structure of human soluble epoxide hydrolase complexed with N-cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: D.9, L.10, D.11, T.123, N.124, K.160, D.185 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.10, A:D.11, A:D.11, A:T.123, A:T.123, A:N.124, A:N.124 Water bridges: A:K.160, A:N.189 Salt bridges: A:K.160 PO4.4: 8 residues within 4Å: Chain B: D.9, L.10, D.11, T.123, N.124, K.160, D.185 Ligands: MG.5 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:L.10, B:D.11, B:D.11, B:T.123, B:N.124, B:N.124 Water bridges: B:D.11, B:K.160, B:N.189 Salt bridges: B:K.160

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.9, D.11, D.184, D.185 Ligands: PO4.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.9, A:D.11, A:D.185, H2O.1, H2O.1 MG.5: 5 residues within 4Å: Chain B: D.9, D.11, D.184, D.185 Ligands: PO4.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.9, B:D.11, B:D.185, H2O.2, H2O.2

2 x I23: N-cycloheptyl-1-[(2,4,6-trimethylphenyl)sulfonyl]piperidine-4-carboxamide(Non-covalent)

I23.3: 15 residues within 4Å: Chain A: F.267, D.335, W.336, F.381, Y.383, Q.384, L.408, L.417, M.419, L.428, Y.466, V.498, L.499, H.524, W.525 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.336, A:F.381, A:Y.383, A:Y.383, A:L.428, A:V.498, A:L.499, A:H.524, A:W.525 Hydrogen bonds: A:Y.466 I23.6: 15 residues within 4Å: Chain B: F.267, D.335, W.336, F.381, Y.383, Q.384, L.408, L.417, M.419, L.428, Y.466, V.498, L.499, H.524, W.525 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.336, B:F.381, B:Y.383, B:Y.383, B:L.428, B:V.498, B:L.499, B:H.524, B:W.525 Hydrogen bonds: B:Y.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pecic, S. et al., Synthesis and structure-activity relationship of piperidine-derived non-urea soluble epoxide hydrolase inhibitors. Bioorg.Med.Chem.Lett. (2013)

Release Date

2012-12-26

Peptides

Bifunctional epoxide hydrolase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional epoxide hydrolase 2

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