SMTL ID : 4hd8.1

Crystal structure of human Sirt3 in complex with Fluor-de-Lys peptide and piceatannol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ARG- HIS- LYS- FDL: Fluor-de-Lys peptide(Non-covalent)

ARG-HIS-LYS-FDL.1: 14 residues within 4Å: Chain A: F.65, I.115, H.133, I.176, V.177, F.178, F.179, G.180, E.181, P.182, L.183, F.187, P.211 Ligands: PIT.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.65, A:I.115, A:I.176, A:F.179 Hydrogen bonds: A:V.177, A:G.180, A:E.181, A:L.183

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.141, C.144, C.165, C.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.144, A:C.165, A:C.168

1 x PIT: PICEATANNOL(Non-covalent)

PIT.3: 6 residues within 4Å: Chain A: E.66, P.68, F.179, G.180 Ligands: ARG-HIS-LYS-FDL.1, ARG-HIS-LYS-FDL.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.66, A:F.179 Hydrogen bonds: A:E.66 Water bridges: A:L.67

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 3 residues within 4Å: Chain A: Q.185, R.186, L.189 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.185, A:L.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gertz, M. et al., A molecular mechanism for direct sirtuin activation by resveratrol. Plos One (2012)

Release Date

2012-12-05

Peptides

NAD-dependent protein deacetylase sirtuin-3, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-3, mitochondrial

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