SMTL ID : 4hfu.2 (1 other biounit)

Crystal structure of Fab 8M2 in complex with a H2N2 influenza virus hemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.166, T.168, W.237, T.239 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.237 NAG-NAG.2: 4 residues within 4Å: Chain E: N.166, T.168, W.237, T.239 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:W.237 NAG-NAG.3: 4 residues within 4Å: Chain I: N.166, T.168, W.237, T.239 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:W.237 NAG-NAG.4: 4 residues within 4Å: Chain M: N.166, T.168, W.237, T.239 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:W.237 NAG-NAG.5: 4 residues within 4Å: Chain Q: N.166, T.168, W.237, T.239 1 PLIP interactions: 1 interactions with chain Q Hydrophobic interactions: Q:W.237 NAG-NAG.6: 4 residues within 4Å: Chain U: N.166, T.168, W.237, T.239 1 PLIP interactions: 1 interactions with chain U Hydrophobic interactions: U:W.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R. et al., A recurring motif for antibody recognition of the receptor-binding site of influenza hemagglutinin. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-02-13

Peptides

Hemagglutinin HA1: AEIMQU
Hemagglutinin HA2: BFJNRV
Fab 8M2 heavy chain: CGKOSW
Fab 8M2 light chain: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
B

F
B

J
B

N
B

R
B

V
B

C
H

G
H

K
H

O
H

S
H

W
H

D
L

H
L

L
L

P
L

T
L

X
L

Hemagglutinin HA1

Hemagglutinin HA2

Fab 8M2 heavy chain

Fab 8M2 light chain

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