SMTL ID : 4hg4.1 (2 other biounits)

Crystal structure of Fab 2G1 in complex with a H2N2 influenza virus hemagglutinin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.166, W.237, T.239 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain C: N.166, W.237, T.239 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 2 residues within 4Å: Chain E: N.166, W.237 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:W.237

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.13 NAG.5: 1 residues within 4Å: Chain E: N.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R. et al., A recurring motif for antibody recognition of the receptor-binding site of influenza hemagglutinin. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-02-13

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF
Fab 2G1 heavy chain: GIK
Fab 2G1 light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

B
a

D
b

F
c

G
J

I
L

K
N

H
K

J
M

L
O

Hemagglutinin HA1

Hemagglutinin HA2

Fab 2G1 heavy chain

Fab 2G1 light chain

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