SMTL ID : 4hhj.1

Dengue serotype 3 RNA-dependent RNA polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.447, H.449, C.463, C.582 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.447, A:H.449, A:C.463, A:C.582 ZN.2: 4 residues within 4Å: Chain A: E.172, H.176, C.181, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.172, A:H.176, A:C.181, A:C.184

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 7 residues within 4Å: Chain A: Q.439, Q.440, P.442, H.446, H.447, W.581, C.582 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.440, A:H.446

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: N.370, H.372, L.374 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.370 Water bridges: A:H.372 PEG.5: 1 residues within 4Å: Chain A: D.561 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.562 PEG.6: 2 residues within 4Å: Chain A: P.557, W.558 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noble, C.G. et al., Conformational flexibility of the Dengue virus RNA-dependent RNA polymerase revealed by a complex with an inhibitor. J.Virol. (2013)

Release Date

2013-02-27

Peptides

Non-structural protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 5

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