SMTL ID : 4hib.1

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.96, E.97, Q.100, L.101, R.291 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.97, A:E.97, A:Q.100, A:R.291 Water bridges: A:R.291

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.69, S.226, V.229, F.244 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.181, K.184 Chain B: G.261 Ligand excluded by PLIP

2 x 16B: N-hydroxycytidine 5'-(dihydrogen phosphate)(Non-covalent)

16B.4: 19 residues within 4Å: Chain A: S.89, D.91, K.113, H.115, D.144, K.146, E.202, M.203, S.204, I.233, P.249, Q.262, Y.264, I.280, V.281, G.282, R.283 Chain B: D.149, T.153 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.89, A:D.91, A:K.113, A:D.144, A:K.146, A:S.204, A:S.204, A:Q.262, A:Y.264, A:G.282, A:R.283, B:T.153 Water bridges: A:G.250, A:G.250, A:V.251, A:G.284 Salt bridges: A:R.283 pi-Cation interactions: A:K.146 16B.5: 19 residues within 4Å: Chain A: D.149, I.150, T.153 Chain B: S.89, D.91, K.113, H.115, D.144, K.146, M.203, S.204, I.233, P.249, Q.262, Y.264, I.280, V.281, G.282, R.283 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.233, B:P.249 Hydrogen bonds: B:S.89, B:D.91, B:K.113, B:S.204, B:S.204, B:S.204, B:Q.262, B:Y.264, B:Y.264, B:G.282, B:R.283, A:T.153 Water bridges: B:G.250, B:G.250 Salt bridges: B:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Purohit, M.K. et al., Novel cytidine-based orotidine-5'-monophosphate decarboxylase inhibitors with an unusual twist. J.Med.Chem. (2012)

Release Date

2012-11-14

Peptides

Uridine 5'-monophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uridine 5'-monophosphate synthase

Related Entries With Identical Sequence