SMTL ID : 4hn3.1 (1 other biounit)

The crystal structure of a sex pheromone precursor (lmo1757) from Listeria monocytogenes EGD-e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.43, V.46 Chain B: F.294, Y.295 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.294 Water bridges: B:F.294 GOL.2: 4 residues within 4Å: Chain A: R.94, N.110, R.114, I.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.110, A:N.110, A:R.114 GOL.7: 7 residues within 4Å: Chain B: G.61, R.64, V.65, Y.215, I.232, E.234, E.279 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.61 GOL.8: 2 residues within 4Å: Chain B: K.69, T.220 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.69, B:K.69, B:T.220 GOL.9: 3 residues within 4Å: Chain B: K.37, Q.81, Y.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.37 Water bridges: B:K.37 GOL.10: 5 residues within 4Å: Chain B: K.155, E.156, G.159, D.160, Y.162 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.156, B:D.160, B:D.160 Water bridges: B:E.156 GOL.11: 2 residues within 4Å: Chain B: K.157 Ligands: PEG.13 No protein-ligand interaction detected (PLIP)

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: R.64, V.65, N.68, I.232, E.234, E.279 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.68 PEG.4: 3 residues within 4Å: Chain A: Y.152, T.161, R.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.161, A:R.207, A:R.207 Water bridges: A:S.47 PEG.5: 3 residues within 4Å: Chain A: N.101, T.181, R.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.185, A:R.185 PEG.12: 5 residues within 4Å: Chain B: E.279, Q.282, L.283, A.284, T.318 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.279 PEG.13: 3 residues within 4Å: Chain B: K.157, Y.158 Ligands: GOL.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.157, B:Y.158

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 4 residues within 4Å: Chain A: F.294, Y.295 Chain B: G.43, V.46 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a sex pheromone precursor (lmo1757) from Listeria monocytogenes EGD-e. To be Published

Release Date

2012-10-31

Peptides

Lmo1757 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lmo1757 protein

Related Entries With Identical Sequence