SMTL ID : 4hn3.2 (1 other biounit)

The crystal structure of a sex pheromone precursor (lmo1757) from Listeria monocytogenes EGD-e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.64, V.65, N.68, I.232, E.234, E.279 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.68, A:E.234 Water bridges: A:E.279 GOL.2: 3 residues within 4Å: Chain A: R.94, R.114, I.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.94, A:R.114 GOL.3: 2 residues within 4Å: Chain A: N.254, Q.313 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.314 GOL.4: 5 residues within 4Å: Chain A: P.291, L.292, S.326, T.327, S.328 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.326 Water bridges: A:S.328 GOL.6: 4 residues within 4Å: Chain B: G.61, R.64, E.234, E.279 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.64, B:E.234 GOL.7: 3 residues within 4Å: Chain B: T.181, N.184, R.185 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.181, B:N.184, B:R.185

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: R.52, Y.53, N.56 Chain B: P.331, Y.349, D.350 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.56, B:Y.349 Water bridges: A:R.52, A:R.52 PEG.8: 4 residues within 4Å: Chain B: I.19, D.134, T.135, V.136 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.136 PEG.9: 5 residues within 4Å: Chain A: G.43, S.47 Chain B: Q.293, F.294, Y.295 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.293 PEG.10: 5 residues within 4Å: Chain B: E.279, Q.282, L.283, A.284, T.318 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a sex pheromone precursor (lmo1757) from Listeria monocytogenes EGD-e. To be Published

Release Date

2012-10-31

Peptides

Lmo1757 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Lmo1757 protein

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