SMTL ID : 4hvs.2 (1 other biounit)

Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX647

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x 647: 5-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-N-[4-(trifluoromethyl)benzyl]pyridin-2-amine(Non-covalent)

647.1: 21 residues within 4Å: Chain A: W.16, L.54, V.62, A.80, K.82, E.99, L.103, L.106, I.112, V.113, T.129, E.130, Y.131, C.132, L.184, H.191, L.200, I.209, C.210, D.211, F.212 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.16, A:L.54, A:V.62, A:V.62, A:L.103, A:T.129, A:L.200, A:D.211, A:F.212, A:F.212 Hydrogen bonds: A:K.82, A:E.99, A:E.130, A:C.132, A:D.211 647.2: 21 residues within 4Å: Chain B: W.16, L.54, V.62, A.80, K.82, E.99, L.103, L.106, I.112, V.113, T.129, E.130, Y.131, C.132, L.184, H.191, L.200, I.209, C.210, D.211, F.212 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:W.16, B:L.54, B:V.62, B:V.62, B:L.103, B:T.129, B:L.200, B:D.211, B:F.212, B:F.212 Hydrogen bonds: B:K.82, B:T.129, B:E.130, B:C.132, B:D.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Design and pharmacology of a highly specific dual FMS and KIT kinase inhibitor. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-27

Peptides

Mast/stem cell growth factor receptor Kit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mast/stem cell growth factor receptor Kit

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