SMTL ID : 7khg.1

Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX3397

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x P31: 5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-{[6-(trifluoromethyl)pyridin-3-yl]methyl}pyridin-2-amine(Non-covalent)

P31.1: 21 residues within 4Å: Chain A: W.16, L.54, V.62, A.80, K.82, E.99, L.103, I.112, V.113, T.129, E.130, Y.131, C.132, G.135, L.184, H.191, L.200, I.209, C.210, D.211, F.212 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.16, A:V.62, A:V.62, A:L.103, A:L.200, A:F.212, A:F.212 Hydrogen bonds: A:E.99, A:E.130, A:C.132, A:D.211 pi-Cation interactions: A:K.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, A.J. et al., Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial. Jama Oncol (2021)

Release Date

2021-07-07

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mast/stem cell growth factor receptor Kit

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