SMTL ID : 4i6m.1

Structure of Arp7-Arp9-Snf2(HSA)-RTT102 subcomplex of SWI/SNF chromatin remodeler.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: H.15, D.190, A.224, Q.229, K.232 Ligands: PO4.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.190, A:D.190, A:Q.229 Water bridges: A:R.16 Salt bridges: A:H.15, A:K.232 PO4.2: 4 residues within 4Å: Chain A: N.53, Y.89, T.93, Q.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.53, A:Y.89, A:Q.94 PO4.3: 9 residues within 4Å: Chain A: H.15, R.16, G.160, A.161, G.186, K.232, S.397, T.398 Ligands: PO4.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.397, A:T.398 Water bridges: A:A.161, A:A.161, A:K.232, A:K.232 Salt bridges: A:H.15, A:R.16, A:K.232 PO4.4: 2 residues within 4Å: Chain A: D.431 Chain C: R.58 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:D.431, A:D.431 Salt bridges: C:R.58, C:K.62 PO4.5: 4 residues within 4Å: Chain A: H.11, G.13, E.141 Ligands: PO4.6 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.141, A:E.141 Water bridges: A:S.14, A:R.16, A:A.161, A:A.161, A:G.436 Salt bridges: A:H.11 PO4.6: 9 residues within 4Å: Chain A: S.14, G.75, D.158, G.160, A.161, S.162, N.165, R.181 Ligands: PO4.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.14, A:S.14, A:D.158, A:A.161, A:S.162, A:S.162, A:N.165 Water bridges: A:H.15 Salt bridges: A:R.181 PO4.7: 8 residues within 4Å: Chain B: S.16, Q.17, N.70, G.71, G.165, T.166, H.167, H.168 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.16, B:Q.17, B:Q.17, B:T.166, B:T.166, B:H.167, B:H.168 Water bridges: B:S.16, B:S.16 Salt bridges: B:H.167, B:H.168 PO4.8: 5 residues within 4Å: Chain B: R.15, G.310, S.397, E.398 Ligands: PO4.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.310, B:S.397, B:E.398, B:E.398 Salt bridges: B:R.15 PO4.9: 3 residues within 4Å: Chain B: S.315, G.316, K.318 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.316 Water bridges: B:F.317, B:K.318 Salt bridges: B:K.318 PO4.10: 7 residues within 4Å: Chain B: Y.13, R.15, D.163, V.164, G.309, G.310 Ligands: PO4.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.13, B:V.164, B:G.310 Salt bridges: B:R.15 PO4.11: 5 residues within 4Å: Chain B: D.206, D.208, Q.209, D.258, K.260 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.208, B:D.208 Salt bridges: B:K.260 PO4.12: 5 residues within 4Å: Chain A: K.293 Chain B: G.286, D.290, D.328, H.329 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.290, B:D.290, B:D.328 Water bridges: B:L.287, B:L.287 Salt bridges: B:H.329, A:K.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schubert, H.L. et al., Structure of an actin-related subcomplex of the SWI/SNF chromatin remodeler. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-02-13

Peptides

Actin-related protein 7: A
Actin-like protein ARP9: B
Actin-like protein ARP9: C
Regulator of Ty1 transposition protein 102: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Actin-related protein 7

Actin-like protein ARP9

Actin-like protein ARP9

Regulator of Ty1 transposition protein 102

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