SMTL ID : 7egp.1

The structure of SWI/SNF-nucleosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-1-1-1-1-1-1-1-2-2-2-2-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.1: 20 residues within 4Å: Chain H: T.337, L.338, K.339, Y.341, D.363, M.365, G.366, L.367, G.368, K.369, T.370, I.371, E.405, W.409, N.742, Q.744, R.770, I.771 Ligands: BEF.2, MG.3 15 PLIP interactions: 15 interactions with chain H Hydrogen bonds: H:T.337, H:K.339, H:Y.341, H:G.366, H:L.367, H:G.368, H:K.369, H:T.370, H:T.370, H:E.405, H:N.742, H:Q.744, H:R.770 Salt bridges: H:K.369, H:R.770

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)

BEF.2: 8 residues within 4Å: Chain H: M.365, G.366, L.741, N.742, R.767, R.770 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain H: K.369, W.402, D.465, E.466 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Z.Y. et al., Structure of the SWI/SNF complex bound to the nucleosome and insights into the functional modularity. Cell Discov (2021)

Release Date

2022-01-12

Peptides

SWI/SNF chromatin-remodeling complex subunit SWI1: A
SWI/SNF chromatin-remodeling complex subunit SNF5: B
SWI/SNF complex subunit SWI3: CG
Transcription regulatory protein SNF12: D
Transcription regulatory protein SNF6: E
SWI/SNF global transcription activator complex subunit SWP82: F
Transcription regulatory protein SNF2: H
Regulator of Ty1 transposition protein 102: I
Actin-related protein 7: J
Actin-like protein ARP9: K
Histone H3.2: LP
Histone H4: MQ
Histone H2A: NR
Histone H2B 1.1: OS

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

G
E

D
H

E
I

F
J

H
A

I
L

J
M

K
N

L
O

P
S

M
P

Q
T

N
Q

R
U

O
R

S
V

SWI/SNF chromatin-remodeling complex subunit SWI1

SWI/SNF chromatin-remodeling complex subunit SNF5

SWI/SNF complex subunit SWI3

Transcription regulatory protein SNF12

Transcription regulatory protein SNF6

SWI/SNF global transcription activator complex subunit SWP82

Transcription regulatory protein SNF2

Regulator of Ty1 transposition protein 102

Actin-related protein 7

Actin-like protein ARP9

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

Related Entries With Identical Sequence