SMTL ID : 4i91.1

Crystal Structure of Cytochrome P450 2B6 (Y226H/K262R) in complex with alpha-Pinene.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: R.79, V.94, I.95, W.102, R.106, M.113, I.160, L.276, A.279, G.280, T.283, T.284, T.287, Q.338, L.343, L.344, V.348, H.350, L.373, P.409, F.410, S.411, R.415, C.417, L.418, G.419, I.422, A.423 Ligands: TMH.6 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:V.94, A:I.95, A:I.160, A:L.276, A:A.279, A:L.343, A:L.344, A:V.348, A:L.373, A:F.410, A:L.418, A:I.422 Hydrogen bonds: A:I.95, A:S.411, A:S.411 Water bridges: A:V.348 Salt bridges: A:R.79, A:R.79, A:R.106, A:H.350, A:R.415 Metal complexes: A:C.417

1 x FRU: beta-D-fructofuranose(Non-covalent)

FRU.2: 7 residues within 4Å: Chain A: R.66, T.404, E.405, F.407, L.412, I.416, E.420 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.66, A:E.405, A:F.407, A:E.420 Water bridges: A:T.404, A:E.420

3 x CM5: 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE(Non-covalent)

CM5.3: 3 residues within 4Å: Chain A: L.197, F.201, F.204 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.197, A:F.201, A:F.201, A:F.204, A:F.204 Water bridges: A:F.204 CM5.4: 10 residues within 4Å: Chain A: C.161, F.169, E.175, F.176, M.179, F.183, I.222, A.224, Y.225, F.277 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.169, A:F.169, A:M.179, A:F.183, A:I.222, A:Y.225, A:Y.225, A:Y.225, A:F.277, A:F.277 CM5.5: 5 residues within 4Å: Chain A: L.24, M.27, D.28, R.29, Q.196 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.24, A:M.27, A:R.29, A:Q.196 Hydrogen bonds: A:R.29 Water bridges: A:R.29

1 x TMH: (+)-alpha-Pinene(Non-covalent)

TMH.6: 5 residues within 4Å: Chain A: I.95, F.278, A.279, T.283 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.278, A:A.279, A:T.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilderman, P.R. et al., Structural and Thermodynamic Basis of (+)-alpha-Pinene Binding to Human Cytochrome P450 2B6. J.Am.Chem.Soc. (2013)

Release Date

2013-07-03

Peptides

Cytochrome P450 2B6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 2B6

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